Szachniuk, Marta : rechercher sur Z-Library

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1

Optimal pathway reconstruction on 3D NMR maps

Szachniuk, Marta, De Cola, Maria Cristina, Felici, Giovanni, de Werra, Dominique, Błażewicz, Jacek

Journal:

Discrete Applied Mathematics

Année:

2015

Langue:

english

Fichier:

PDF, 815 KB

english, 2015

2

The Orderly Colored Longest Path Problem – a survey of applications and new algorithms

Szachniuk, Marta, Cristina De Cola, Maria, Felici, Giovanni, Blazewicz, Jacek

Journal:

RAIRO - Operations Research

Année:

2014

Langue:

english

Fichier:

PDF, 806 KB

english, 2014

3

Recent Advances in Operations Research in Computational Biology, Bioinformatics and Medicine

Turkay, Metin, Felici, Giovanni, Szachniuk, Marta, Lukasiak, Piotr

Journal:

RAIRO - Operations Research

Année:

2016

Langue:

english

Fichier:

PDF, 86 KB

english, 2016

4

Discovering Structural Motifs in miRNA Precursors from the Viridiplantae Kingdom

Miskiewicz, Joanna, Szachniuk, Marta

Journal:

Année:

2018

Langue:

english

Fichier:

PDF, 1.62 MB

english, 2018

5

RNA FRABASE 2.0: an advanced web-accessible database with the capacity to search the three-dimensional fragments within RNA structures

Mariusz Popenda, Marta Szachniuk, Marek Blazewicz, Szymon Wasik, Edmund K Burke, Jacek Blazewicz, Ryszard W Adamiak

Journal:

BMC Bioinformatics

Année:

2010

Langue:

english

Fichier:

PDF, 5.56 MB

english, 2010

6

Poseidon: An information retrieval and extraction system for metagenomic marine science

Marcin Radom, Agnieszka Rybarczyk, Renzo Kottmann, Piotr Formanowicz, Marta Szachniuk, Frank Oliver Glöckner, Dietrich Rebholz-Schuhmann, Jacek Błażewicz

Journal:

Ecological Informatics

Année:

2012

Langue:

english

Fichier:

PDF, 783 KB

english, 2012

7

MLP accompanied beam search for the resonance assignment problem

Szachniuk, Marta, Malaczynski, Mikolaj, Pesch, Erwin, Burke, Edmund K., Blazewicz, Jacek

Journal:

Journal of Heuristics

Année:

2013

Langue:

english

Fichier:

PDF, 1.45 MB

english, 2013

8

MCQ4Structures to compute similarity of molecule structures

Zok, Tomasz, Popenda, Mariusz, Szachniuk, Marta

Journal:

Central European Journal of Operations Research

Année:

2014

Langue:

english

Fichier:

PDF, 714 KB

english, 2014

9

[IEEE 2009 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB) - Nashville, TN, USA (2009.03.30-2009.04.2)] 2009 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology - An assignment walk through 3D NMR spectrum

Szachniuk, Marta, Popenda, Mariusz, Adamiak, Ryszard W., Blazewicz, Jacek

Année:

2009

Langue:

english

Fichier:

PDF, 1.50 MB

english, 2009

10

Sorting signal targeting mRNA into hepatic extracellular vesicles

Szostak, Natalia, Royo, Felix, Rybarczyk, Agnieszka, Szachniuk, Marta, Blazewicz, Jacek, del Sol, Antonio, Falcon-Perez, Juan M

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 2.22 MB

english, 2014

11

RNAssess—a web server for quality assessment of RNA 3D structures

Lukasiak, Piotr, Antczak, Maciej, Ratajczak, Tomasz, Szachniuk, Marta, Popenda, Mariusz, Adamiak, Ryszard W., Blazewicz, Jacek

Journal:

Nucleic Acids Research

Année:

2015

Langue:

english

Fichier:

PDF, 1.43 MB

english, 2015

12

Building the Library of Rna 3D Nucleotide Conformations Using the Clustering Approach

Zok, Tomasz, Antczak, Maciej, Riedel, Martin, Nebel, David, Villmann, Thomas, Lukasiak, Piotr, Blazewicz, Jacek, Szachniuk, Marta

Journal:

International Journal of Applied Mathematics and Computer Science

Année:

2015

Langue:

english

Fichier:

PDF, 777 KB

english, 2015

13

New in silico approach to assessing RNA secondary structures with non-canonical base pairs

Rybarczyk, Agnieszka, Szostak, Natalia, Antczak, Maciej, Zok, Tomasz, Popenda, Mariusz, Adamiak, Ryszard, Blazewicz, Jacek, Szachniuk, Marta

Journal:

BMC Bioinformatics

Année:

2015

Langue:

english

Fichier:

PDF, 1.50 MB

english, 2015

14

New algorithms to represent complex pseudoknotted RNA structures in dot-bracket notation

Antczak, Maciej, Popenda, Mariusz, Zok, Tomasz, Zurkowski, Michal, Adamiak, Ryszard W, Szachniuk, Marta

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 768 KB

english, 2017

15

RNApdbee 2.0: multifunctional tool for RNA structure annotation

Zok, Tomasz, Antczak, Maciej, Zurkowski, Michal, Popenda, Mariusz, Blazewicz, Jacek, Adamiak, Ryszard W, Szachniuk, Marta

Journal:

Nucleic Acids Research

Année:

2018

Langue:

english

Fichier:

PDF, 959 KB

english, 2018

16

LCS-TA to identify similar fragments in RNA 3D structures

Wiedemann, Jakub, Zok, Tomasz, Milostan, Maciej, Szachniuk, Marta

Journal:

BMC Bioinformatics

Année:

2017

Langue:

english

Fichier:

PDF, 3.39 MB

english, 2017

17

RNAvista: a webserver to assess RNA secondary structures with non-canonical base pairs

Antczak, Maciej, Zablocki, Marcin, Zok, Tomasz, Rybarczyk, Agnieszka, Blazewicz, Jacek, Szachniuk, Marta, Valencia, Alfonso

Journal:

Année:

2018

Langue:

english

Fichier:

PDF, 447 KB

english, 2018

18

New functionality of RNAComposer: an application to shape the axis of miR160 precursor structure

Antczak, Maciej, Popenda, Mariusz, Zok, Tomasz, Sarzynska, Joanna, Ratajczak, Tomasz, Tomczyk, Katarzyna, Adamiak, Ryszard W., Szachniuk, Marta

Journal:

Acta Biochimica Polonica

Année:

2016

Fichier:

PDF, 3.59 MB

2016

19

New functionality of RNAComposer: an application to shape the axis of miR160 precursor structure

Antczak, Maciej, Popenda, Mariusz, Zok, Tomasz, Sarzynska, Joanna, Ratajczak, Tomasz, Tomczyk, Katarzyna, Adamiak, Ryszard W., Szachniuk, Marta

Journal:

Acta Biochimica Polonica

Année:

2016

Langue:

english

Fichier:

PDF, 3.59 MB

english, 2016

20

RNAfitme: a webserver for modeling nucleobase and nucleoside residue conformation in fixed-backbone RNA structures

Antczak, Maciej, Zok, Tomasz, Osowiecki, Maciej, Popenda, Mariusz, Adamiak, Ryszard W., Szachniuk, Marta

Journal:

BMC Bioinformatics

Année:

2018

Langue:

english

Fichier:

PDF, 2.33 MB

english, 2018

21

AIP Conference Proceedings [AIP 2013 INTERNATIONAL SYMPOSIUM ON COMPUTATIONAL MODELS FOR LIFE SCIENCES - Sydney, Australia (27–29 November 2013)] - Turning data into folds using RNAComposer

Szachniuk, Marta, Sarzyńska, Joanna, Blazewicz, Jacek

Année:

2013

Langue:

english

Fichier:

PDF, 694 KB

english, 2013

22

Topology-based classification of tetrads and quadruplex structures

Popenda, Mariusz, Miskiewicz, Joanna, Sarzynska, Joanna, Zok , Tomasz, Szachniuk, Marta, Valencia, Alfonso

Journal:

Année:

2019

Langue:

english

Fichier:

PDF, 549 KB

english, 2019

23

RNA-Puzzles toolkit: a computational resource of RNA 3D structure benchmark datasets, structure manipulation, and evaluation tools

Magnus, Marcin, Antczak, Maciej, Zok, Tomasz, Wiedemann, Jakub, Lukasiak, Piotr, Cao, Yang, Bujnicki, Janusz M, Westhof, Eric, Szachniuk, Marta, Miao, Zhichao

Journal:

Nucleic Acids Research

Année:

2019

Fichier:

PDF, 6.38 MB

2019

24

ElTetrado: a tool for identification and classification of tetrads and quadruplexes

Zok, Tomasz, Popenda, Mariusz, Szachniuk, Marta

Journal:

BMC Bioinformatics

Année:

2020

Fichier:

PDF, 823 KB

2020

25

How bioinformatics resources work with G4 RNAs

Miskiewicz, Joanna, Sarzynska, Joanna, Szachniuk, Marta

Journal:

Briefings in Bioinformatics

Année:

2020

Fichier:

PDF, 741 KB

2020

26

In Vitro and in Silico Analysis of miR-125a with rs12976445 Polymorphism in Breast Cancer Patients

Lehmann, Tomasz P., Miskiewicz, Joanna, Szostak, Natalia, Szachniuk, Marta, Grodecka-Gazdecka, Sylwia, JagodziÅski, PaweÅ P.

Journal:

Applied Sciences

Année:

2020

Fichier:

PDF, 697 KB

2020

27

A new molecular mechanism of RNA circularization and the microRNA sponge formation

Belter, Agnieszka, Popenda, Mariusz, Sajek, Marcin, WoÅºniak, Tomasz, NaskrÄt-Barciszewska, MirosÅawa Z., Szachniuk, Marta, Jurga, Stefan, Barciszewski, Jan

Journal:

Journal of Biomolecular Structure and Dynamics

Année:

2020

Fichier:

PDF, 2.98 MB

2020